STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0498KEGG: pvi:Cvib_1472 hypothetical protein. (678 aa)    
Predicted Functional Partners:
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
  
     0.770
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
  
     0.748
rpsU
PFAM: ribosomal protein S21; KEGG: pvi:Cvib_0348 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
    0.740
Ppha_0867
PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa.
  
     0.733
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
  
     0.718
Ppha_2892
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
     0.718
Ppha_0732
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like.
  
     0.706
Ppha_1503
KEGG: cph:Cpha266_1535 hypothetical protein.
  
     0.695
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
 
     0.682
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
 
     0.681
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.