STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0522KEGG: mmw:Mmwyl1_0818 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Ppha_0521
PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_1383 hypothetical protein.
 
     0.945
Ppha_0520
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2635 polysaccharide biosynthesis protein CapD.
       0.523
Ppha_0519
Capsular exopolysaccharide family; KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.461
Ppha_0897
KEGG: cch:Cag_0841 hypothetical protein.
  
     0.455
Ppha_1722
KEGG: ape:APE_0890a.1 hypothetical protein.
  
     0.448
Ppha_2348
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.447
Ppha_0523
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0616 ABC transporter related.
       0.442
Ppha_0518
KEGG: cph:Cpha266_2650 hypothetical protein.
       0.433
Ppha_2345
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.430
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
  
     0.416
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.