STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0523PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0616 ABC transporter related. (571 aa)    
Predicted Functional Partners:
Ppha_0635
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters.
 
 
0.796
Ppha_0535
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2393 short-chain dehydrogenase/reductase SDR.
 
 
 0.661
Ppha_0525
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12175 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.652
Ppha_0524
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lic:LIC12176 UDP-glucose 4-epimerase.
  
  
 0.648
Ppha_0529
Nucleotidyl transferase; PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: tdn:Tmden_0598 nucleotidyl transferase.
  
 
 0.648
Ppha_0527
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: syw:SYNW0448 putative N-acetylneuraminic acid synthetase.
       0.642
Ppha_0528
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: syw:SYNW0449 putative N-acetylglucosamine-6-phosphate 2-epimerase.
       0.639
Ppha_0526
PFAM: transferase hexapeptide repeat containing protein; KEGG: lic:LIC12174 acetyl transferase.
       0.636
Ppha_0533
PFAM: oxidoreductase domain protein; KEGG: pmf:P9303_01161 hypothetical protein.
 
  
 0.627
Ppha_0538
TIGRFAM: methyltransferase FkbM family; KEGG: ava:Ava_1043 methyltransferase FkbM.
 
 
  0.613
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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