STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0535PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2393 short-chain dehydrogenase/reductase SDR. (267 aa)    
Predicted Functional Partners:
Ppha_0533
PFAM: oxidoreductase domain protein; KEGG: pmf:P9303_01161 hypothetical protein.
 
   
 0.841
Ppha_0529
Nucleotidyl transferase; PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: tdn:Tmden_0598 nucleotidyl transferase.
 
 
 0.838
Ppha_0534
PFAM: acylneuraminate cytidylyltransferase; KEGG: dvl:Dvul_2588 N-acylneuraminate cytidylyltransferase.
 
 
   0.827
Ppha_0536
PFAM: transferase hexapeptide repeat containing protein; KEGG: vvy:VV0322 acetyltransferase.
  
  
 0.775
Ppha_0530
KEGG: lpc:LPC_2544 LPS biosynthesis protein, PseA-like protein.
 
     0.772
Ppha_0524
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lic:LIC12176 UDP-glucose 4-epimerase.
 
 
   0.769
Ppha_1918
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1156 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.747
Ppha_0527
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: syw:SYNW0448 putative N-acetylneuraminic acid synthetase.
 
   
 0.746
Ppha_2740
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_0189 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.745
Ppha_0531
Histidine biosynthesis protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.741
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.