STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0579PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (394 aa)    
Predicted Functional Partners:
Ppha_0520
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2635 polysaccharide biosynthesis protein CapD.
 
  
 0.702
Ppha_0574
PFAM: sugar transferase; KEGG: rrs:RoseRS_4262 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.696
Ppha_0578
PFAM: transferase hexapeptide repeat containing protein; KEGG: bxe:Bxe_A2414 putative O-acyltransferase, CysE/LacA/LpxA/NodL family.
  
  
 0.694
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
  
 0.634
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
   
  
 0.625
Ppha_2495
PFAM: peptidase U32; KEGG: cph:Cpha266_2165 peptidase U32.
      
 0.623
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
      
 0.618
Ppha_0572
KEGG: cph:Cpha266_2607 putative acetyltransferase.
 
   0.595
Ppha_0573
PFAM: glycosyl transferase group 1; KEGG: eba:ebA5893 predicted glycosyltransferase.
 
    0.570
Ppha_0575
KEGG: pat:Patl_3073 hypothetical protein.
  
   0.555
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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