STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0593Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0084 transcriptional regulator, XRE family. (108 aa)    
Predicted Functional Partners:
Ppha_1723
PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0835 conserved hypothetical protein, phage-related.
  
     0.773
Ppha_2242
PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related.
  
     0.773
Ppha_0155
PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein.
  
     0.629
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.