STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0632TIGRFAM: outer membrane adhesin like proteiin; KEGG: cph:Cpha266_1846 putative outer membrane adhesin like proteiin. (7233 aa)    
Predicted Functional Partners:
Ppha_0633
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family.
 
  
 0.881
Ppha_0635
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters.
  
  
 0.680
Ppha_0634
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_1844 hypothetical protein.
  
  
 0.599
Ppha_0636
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein.
 
  
 0.572
Ppha_2359
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE.
   
 
 0.539
Ppha_0453
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_0755 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
  
 
 0.533
Ppha_1140
PFAM: protein of unknown function DUF255; KEGG: cph:Cpha266_1460 protein of unknown function DUF255.
    
 
 0.522
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.512
Ppha_2580
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor.
    
 
 0.485
Ppha_2848
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mag:amb0540 outer membrane receptor protein.
    
 
 0.485
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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