STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0652PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15). (734 aa)    
Predicted Functional Partners:
Ppha_0653
KEGG: plt:Plut_1647 hypothetical protein.
 
     0.883
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
 
 
 0.838
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
 
   
 0.779
Ppha_2580
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor.
  
     0.753
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
  
     0.750
Ppha_2797
KEGG: cph:Cpha266_2554 hypothetical protein.
  
  
 0.741
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
  
  
 0.738
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
     0.726
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
 
     0.713
Ppha_0723
PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein.
  
     0.712
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.