Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_0671KEGG: cph:Cpha266_0557 hypothetical protein. (444 aa)    
Predicted Functional Partners:
Ppha_0247
Conserved hypothetical protein; KEGG: gvi:gll1120 unknown protein.
  
     0.719
Ppha_1775
KEGG: cch:Cag_0405 hypothetical protein.
  
     0.702
Ppha_0772
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12.
  
     0.701
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.698
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.645
Ppha_0248
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: cch:Cag_1875 TPR repeat.
  
     0.643
Ppha_1677
PFAM: PhoU family protein; KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU.
  
     0.637
Ppha_2628
KEGG: mul:MUL_3181 hypothetical protein.
  
     0.636
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.624
Ppha_1323
KEGG: cph:Cpha266_1270 hypothetical protein.
  
     0.622
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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