STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0720KEGG: cph:Cpha266_0592 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Ppha_0257
KEGG: cch:Cag_1865 hypothetical protein.
 
     0.657
Ppha_2204
PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein.
  
     0.613
Ppha_2398
KEGG: cph:Cpha266_2043 hypothetical protein.
  
     0.548
Ppha_1069
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: bth:BT_2774 putative adenylate cyclase.
  
  
 0.497
Ppha_1726
KEGG: cph:Cpha266_1199 hypothetical protein.
  
     0.496
Ppha_1690
KEGG: cph:Cpha266_1199 hypothetical protein.
  
     0.493
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.482
Ppha_1322
Hypothetical protein; KEGG: cch:Cag_0916 C-type cytochrome, putative.
  
     0.460
Ppha_1477
KEGG: cch:Cag_0916 C-type cytochrome, putative.
  
     0.441
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.436
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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