STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0729PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein. (248 aa)    
Predicted Functional Partners:
Ppha_0730
KEGG: cph:Cpha266_0604 hypothetical protein.
 
 
 0.987
Ppha_0731
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR.
 
 
 0.987
Ppha_0732
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 0.896
Ppha_2163
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein.
 
 
 0.799
Ppha_1385
KEGG: cph:Cpha266_1319 phosphate-binding protein, putative.
 
  
 0.772
Ppha_1987
TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 0.711
Ppha_2162
KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family.
  
 
 0.668
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
   
 0.638
Ppha_2369
PFAM: permease YjgP/YjgQ family protein; KEGG: cch:Cag_0302 hypothetical protein.
  
     0.532
Ppha_1884
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein.
  
   
 0.523
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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