STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0731PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR. (174 aa)    
Predicted Functional Partners:
Ppha_0729
PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein.
 
 
 0.986
Ppha_0732
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like.
  
 
 0.886
Ppha_0730
KEGG: cph:Cpha266_0604 hypothetical protein.
 
    
0.838
Ppha_1385
KEGG: cph:Cpha266_1319 phosphate-binding protein, putative.
 
     0.774
Ppha_2164
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel.
  
 
 0.754
Ppha_1987
TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 0.722
Ppha_2162
KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family.
 
 
 0.719
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
   
 
 0.565
Ppha_0627
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0514 major facilitator superfamily MFS_1.
  
 
 
 0.523
Ppha_2368
PFAM: peptidase M16 domain protein; KEGG: cph:Cpha266_2025 peptidase M16 domain protein; Belongs to the peptidase M16 family.
  
     0.471
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.