STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0741KEGG: bxe:Bxe_B0298 putative phage resistance protein. (417 aa)    
Predicted Functional Partners:
Ppha_2041
KEGG: swo:Swol_0999 ATP-dependent protease La.
 
    0.632
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
  
    0.577
Ppha_2912
KEGG: rrs:RoseRS_0299 hypothetical protein.
  
    0.577
Ppha_1892
PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814.
  
    0.475
Ppha_0745
PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3549 restriction modification system DNA specificity domain.
  
    0.465
Ppha_0743
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.435
Ppha_0744
KEGG: sbl:Sbal_3718 protein of unknown function DUF1016.
       0.430
Ppha_0746
KEGG: dac:Daci_2437 hypothetical protein.
       0.430
Ppha_0747
KEGG: dac:Daci_2436 hypothetical protein.
       0.430
Ppha_0740
KEGG: cch:Cag_0285 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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