STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0743Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (999 aa)    
Predicted Functional Partners:
Ppha_0745
PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3549 restriction modification system DNA specificity domain.
 
  
 0.965
Ppha_0750
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit.
 
  
 0.890
Ppha_0746
KEGG: dac:Daci_2437 hypothetical protein.
       0.778
Ppha_0744
KEGG: sbl:Sbal_3718 protein of unknown function DUF1016.
       0.774
Ppha_0747
KEGG: dac:Daci_2436 hypothetical protein.
       0.773
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
 
  
 0.713
Ppha_0748
KEGG: cch:Cag_1388 hypothetical protein.
       0.531
Ppha_1219
KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain.
 
  
 0.511
Ppha_0913
KEGG: cph:Cpha266_1712 N-6 DNA methylase.
 
  
 0.473
Ppha_1604
KEGG: mma:MM_2294 type I restriction-modification system specificity subunit.
 
  
 0.472
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.