STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0749KEGG: cch:Cag_1091 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Ppha_0596
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.769
Ppha_0599
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.769
Ppha_0616
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.767
Ppha_0750
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit.
       0.576
Ppha_1848
KEGG: scl:sce7684 hypothetical protein.
  
     0.565
Ppha_1021
KEGG: cph:Cpha266_1833 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein.
  
    0.563
Ppha_0760
PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_0755 hypothetical protein.
  
     0.551
Ppha_1564
PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_1721 hypothetical protein.
  
     0.548
Ppha_1851
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0938 helix-turn-helix domain protein.
  
     0.527
Ppha_1849
PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase.
  
     0.490
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.