STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0757KEGG: ajs:Ajs_3020 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Ppha_0756
KEGG: swo:Swol_2490 hypothetical protein.
 
     0.947
Ppha_2865
KEGG: swo:Swol_2490 hypothetical protein.
 
     0.781
Ppha_2119
KEGG: cch:Cag_1343 hypothetical protein.
  
     0.630
Ppha_2294
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.590
Ppha_0616
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.569
Ppha_2444
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.556
Ppha_0599
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.554
Ppha_2824
KEGG: mar:MAE_61600 predicted nucleic acid-binding protein.
  
     0.554
Ppha_0596
KEGG: cch:Cag_1240 hypothetical protein.
  
     0.549
Ppha_0358
KEGG: mar:MAE_48580 hypothetical protein.
  
     0.541
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.