STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0768PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein. (423 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.943
Ppha_0769
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit.
 
 
 0.921
Ppha_0066
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0096 outer membrane efflux protein.
  
     0.590
Ppha_1633
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein.
  
     0.554
Ppha_1634
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.543
Ppha_0064
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0094 secretion protein HlyD family protein.
 
 
 0.531
Ppha_1884
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein.
  
     0.522
Ppha_2580
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor.
  
   
 0.512
Ppha_0380
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1747 secretion protein HlyD family protein.
  
 
 0.471
Ppha_0636
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein.
  
 
 0.471
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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