STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0779PFAM: 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD. (418 aa)    
Predicted Functional Partners:
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
 
     0.793
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.677
Ppha_0195
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  
 0.663
Ppha_0198
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cph:Cpha266_2491 [acyl-carrier-protein] S-malonyltransferase.
  
  
 0.598
Ppha_0781
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin).
     
 0.534
Ppha_1169
KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like.
 
  
 0.522
Ppha_2102
TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein.
  
     0.509
Ppha_1586
PFAM: Domain of unknown function DUF1801; KEGG: cph:Cpha266_1691 hypothetical protein.
  
     0.479
Ppha_0113
TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein.
  
     0.471
Ppha_0575
KEGG: pat:Patl_3073 hypothetical protein.
  
 
 0.429
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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