STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0798PFAM: Flp/Fap pilin component; KEGG: pvi:Cvib_0571 Flp/Fap pilin component. (81 aa)    
Predicted Functional Partners:
Ppha_0799
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pvi:Cvib_0570 SAF domain.
  
  
 0.934
Ppha_0803
KEGG: plt:Plut_0656 Flp pilus assembly protein ATPase CpaE-like.
  
  
 0.921
Ppha_0800
PFAM: type II and III secretion system protein; transport-associated; KEGG: pvi:Cvib_0569 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.863
Ppha_0802
KEGG: pvi:Cvib_0567 hypothetical protein.
  
  
 0.821
Ppha_0804
PFAM: type II secretion system protein E; KEGG: pvi:Cvib_0565 type II secretion system protein E.
  
  
 0.810
Ppha_0805
PFAM: type II secretion system protein; KEGG: pvi:Cvib_0564 type II secretion system protein.
  
  
 0.806
Ppha_0806
PFAM: type II secretion system protein; KEGG: plt:Plut_0793 TadC protein.
  
  
 0.773
Ppha_0801
PFAM: TadE family protein; KEGG: pvi:Cvib_0568 TadE family protein.
       0.701
Ppha_0807
PFAM: peptidase A24A prepilin type IV; KEGG: pvi:Cvib_0562 peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
       0.648
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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