Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_0808PFAM: Radical SAM domain protein; KEGG: cte:CT1749 MoaA/NifB/PqqE family protein. (359 aa)    
Predicted Functional Partners:
Ppha_0809
Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1748 methlytransferase, UbiE/COQ5 family.
     
 0.680
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.649
Ppha_2666
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
   
 0.584
Ppha_1677
PFAM: PhoU family protein; KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU.
  
    0.578
Ppha_2149
PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin.
  
    0.567
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.565
Ppha_1664
KEGG: cph:Cpha266_1274 hypothetical protein.
  
     0.564
Ppha_1990
KEGG: cte:CT1757 hypothetical protein.
  
    0.555
Ppha_0802
KEGG: pvi:Cvib_0567 hypothetical protein.
 
     0.554
Ppha_1372
KEGG: pvi:Cvib_0831 hypothetical protein.
  
     0.552
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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