STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0836PFAM: plasmid stabilization system; KEGG: cch:Cag_0575 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Ppha_0835
KEGG: cch:Cag_0574 hypothetical protein.
 
     0.946
Ppha_2193
PFAM: plasmid stabilization system; KEGG: cch:Cag_0909 hypothetical protein.
  
     0.774
Ppha_1043
PFAM: plasmid stabilization system; KEGG: cch:Cag_0957 hypothetical protein.
  
     0.707
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
 
 
 0.635
Ppha_2194
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.635
Ppha_1179
KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family.
 
 
 0.595
Ppha_1042
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.525
Ppha_0279
PFAM: plasmid stabilization system; KEGG: cph:Cpha266_0252 hypothetical protein.
  
     0.496
Ppha_2503
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein.
 
 
   0.467
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
       0.440
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.