STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaD-2KEGG: plt:Plut_0567 pyruvoyl-dependent arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family. (181 aa)    
Predicted Functional Partners:
Ppha_1028
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cph:Cpha266_1901 porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
    
  0.901
pdaD
KEGG: plt:Plut_0567 pyruvoyl-dependent arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
  
  
 
0.900
pdaD-3
KEGG: plt:Plut_0567 pyruvoyl-dependent arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
  
  
 
0.900
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cch:Cag_0730 argininosuccinate lyase.
     
  0.800
Ppha_2876
PFAM: deoxyhypusine synthase; KEGG: cph:Cpha266_2699 deoxyhypusine synthase-like protein; Belongs to the deoxyhypusine synthase family.
 
   
 0.493
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.