STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0886KEGG: cph:Cpha266_1440 hypothetical protein. (69 aa)    
Predicted Functional Partners:
Ppha_2116
KEGG: mar:MAE_62820 hypothetical protein.
 
 
 
 0.567
Ppha_1594
KEGG: mar:MAE_00130 hypothetical protein.
 
 
 
 0.562
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.547
Ppha_1371
Transcriptional regulator/antitoxin, MazE; TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE.
  
     0.532
Ppha_1740
KEGG: amr:AM1_1925 hypothetical protein.
  
     0.484
Ppha_1909
KEGG: pna:Pnap_3261 hypothetical protein.
  
     0.482
Ppha_0888
KEGG: cch:Cag_0704 hypothetical protein.
       0.437
Ppha_0885
Hypothetical protein; KEGG: amt:Amet_0623 transposase, IS4.
       0.416
Ppha_0835
KEGG: cch:Cag_0574 hypothetical protein.
  
     0.412
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.