STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0892KEGG: cch:Cag_0843 hypothetical protein. (1121 aa)    
Predicted Functional Partners:
Ppha_0891
KEGG: cph:Cpha266_1443 hypothetical protein.
 
   
 0.950
Ppha_0901
KEGG: cch:Cag_0838 hypothetical protein.
 
  
 0.795
Ppha_0900
KEGG: cch:Cag_0839 hypothetical protein.
 
     0.786
Ppha_1404
KEGG: cph:Cpha266_1289 hypothetical protein.
  
     0.478
Ppha_0889
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 putative transcriptional regulator.
       0.448
Ppha_0890
KEGG: gur:Gura_2921 hypothetical protein.
       0.444
Ppha_1135
KEGG: eba:ebA5226 hypothetical protein.
  
     0.440
Ppha_0893
Hypothetical protein.
       0.423
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.