STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0895KEGG: cch:Cag_0843 hypothetical protein. (54 aa)    
Predicted Functional Partners:
Ppha_0901
KEGG: cch:Cag_0838 hypothetical protein.
 
   0.951
Ppha_0900
KEGG: cch:Cag_0839 hypothetical protein.
 
     0.825
Ppha_0891
KEGG: cph:Cpha266_1443 hypothetical protein.
 
     0.787
Ppha_0894
Hypothetical protein.
       0.773
Ppha_1404
KEGG: cph:Cpha266_1289 hypothetical protein.
  
     0.553
Ppha_0855
PFAM: Peptidase M23; KEGG: cch:Cag_1281 membrane-bound metallopeptidase-like.
  
   0.550
Ppha_0896
KEGG: btr:Btr_1076 hypothetical protein.
       0.468
Ppha_0897
KEGG: cch:Cag_0841 hypothetical protein.
       0.468
Ppha_1135
KEGG: eba:ebA5226 hypothetical protein.
  
     0.404
Ppha_2244
KEGG: cph:Cpha266_0634 putative transcriptional regulator.
 
     0.400
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.