STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0904ATPase; KEGG: cph:Cpha266_2115 ATPase. (428 aa)    
Predicted Functional Partners:
Ppha_0133
KEGG: cph:Cpha266_0779 ATPase (AAA+ superfamily)-like.
  
     0.772
Ppha_1959
KEGG: dol:Dole_0644 hypothetical protein.
  
     0.772
Ppha_0143
KEGG: cph:Cpha266_0774 hypothetical protein.
  
     0.673
Ppha_1428
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: lpn:lpg2559 ATP-dependent DNA helicase.
  
     0.605
Ppha_0889
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 putative transcriptional regulator.
  
     0.560
Ppha_0792
KEGG: mmw:Mmwyl1_0848 hypothetical protein.
  
     0.535
Ppha_1455
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1129 putative transcriptional regulator.
  
     0.497
Ppha_1448
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase.
  
     0.474
Ppha_2557
PFAM: ATPase; KEGG: rms:RMA_0723 archaeal ATPase family protein.
  
     0.472
Ppha_0905
KEGG: rpe:RPE_0295 hypothetical protein.
       0.460
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.