STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0926KEGG: cph:Cpha266_1771 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Ppha_0925
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: plt:Plut_0588 metallo-beta-lactamase superfamily protein.
       0.465
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.458
Ppha_1775
KEGG: cch:Cag_0405 hypothetical protein.
  
     0.449
Ppha_1094
PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter, putative.
  
     0.430
Ppha_1997
KEGG: cph:Cpha266_0440 TonB-dependent receptor, putative.
  
     0.401
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.