STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0946KEGG: pvi:Cvib_1249 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Ppha_0945
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plt:Plut_1433 biotin carboxyl carrier protein.
 
  
  0.987
Ppha_0944
KEGG: plt:Plut_1434 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit.
 
 
  0.985
Ppha_0947
PFAM: carboxyl transferase; KEGG: plt:Plut_1431 propionyl-CoA carboxylase beta chain.
  
    0.779
Ppha_2085
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.595
Ppha_1503
KEGG: cph:Cpha266_1535 hypothetical protein.
  
     0.531
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
  
     0.519
Ppha_0948
KEGG: pvi:Cvib_1247 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase.
       0.510
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.486
Ppha_0943
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: cph:Cpha266_1804 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.483
Ppha_1206
KEGG: cph:Cpha266_1548 hypothetical protein.
  
     0.483
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.