STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0967KEGG: pvi:Cvib_0081 hypothetical protein. (508 aa)    
Predicted Functional Partners:
Ppha_0968
PFAM: Protein of unknown function DUF1790; KEGG: pvi:Cvib_0068 hypothetical protein.
       0.639
Ppha_2345
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.610
Ppha_1399
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.607
Ppha_2348
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.600
Ppha_1410
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.584
Ppha_2379
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.564
Ppha_1257
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.557
Ppha_1248
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.550
Ppha_2635
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 putative addiction module component, TIGR02574 family.
  
     0.430
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.