STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0984Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_2518 peptidase M24. (390 aa)    
Predicted Functional Partners:
Ppha_0985
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: pca:Pcar_1787 hypothetical protein.
       0.572
Ppha_0986
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pca:Pcar_1786 helix-turn-helix transcriptional regulator.
       0.572
Ppha_0983
PFAM: peptidase C1A papain; KEGG: mba:Mbar_A0734 cysteine protease (papain C1 family).
  
  
 0.496
Ppha_0987
PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein.
       0.491
Ppha_0253
PFAM: GCN5-related N-acetyltransferase; KEGG: plt:Plut_0166 acetyltransferase; Belongs to the acetyltransferase family.
 
     0.482
Ppha_0695
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.475
Ppha_1506
PFAM: phosphoesterase RecJ domain protein; KEGG: plt:Plut_0953 Dhh family protein.
 
     0.448
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.429
Ppha_2670
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0241 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.419
Ppha_0988
KEGG: pna:Pnap_4866 hypothetical protein.
       0.417
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.