STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0988KEGG: pna:Pnap_4866 hypothetical protein. (151 aa)    
Predicted Functional Partners:
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.773
Ppha_0987
PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein.
       0.642
Ppha_0985
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: pca:Pcar_1787 hypothetical protein.
       0.548
Ppha_0986
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pca:Pcar_1786 helix-turn-helix transcriptional regulator.
       0.548
Ppha_0990
PFAM: PUCC protein; KEGG: cte:CT1441 PucC protein.
       0.542
Ppha_0991
PFAM: Radical SAM domain protein; KEGG: cch:Cag_0688 MoaA/NifB/PqqE family protein.
       0.496
Ppha_0984
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_2518 peptidase M24.
       0.417
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.