STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0996PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344. (294 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.802
Ppha_0501
PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_0423 exopolyphosphatase, putative.
 
  
 0.594
Ppha_2821
PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_2019 exopolyphosphatase, putative.
 
  
 0.499
Ppha_2075
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: cch:Cag_1357 cytochrome-c oxidase FixO chain.
   
    0.478
Ppha_0994
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family.
     
 0.454
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
   
    0.441
Ppha_0995
KEGG: cch:Cag_0441 hypothetical protein.
       0.431
Ppha_0993
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase.
     
 0.411
Ppha_0992
KEGG: cch:Cag_1146 hypothetical protein.
       0.409
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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