Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Ppha_0999PFAM: acyltransferase 3; KEGG: plt:Plut_1385 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Ppha_1000
KEGG: plt:Plut_1384 hypothetical protein.
       0.773
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
  
  
 0.599
Ppha_1011
PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein.
  
  
 0.585
Ppha_1001
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1.
  
    0.576
Ppha_1019
KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
  
  
 0.573
Ppha_0519
Capsular exopolysaccharide family; KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.540
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.527
Ppha_0997
PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_0277 Sel1-like repeat.
       0.490
Ppha_1004
KEGG: cph:Cpha266_1816 hypothetical protein.
  
    0.476
Ppha_1009
PFAM: glycosyl transferase family 8; KEGG: cph:Cpha266_1821 glycosyl transferase, family 8.
  
    0.449
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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