STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1002PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1814 radical SAM domain protein. (365 aa)    
Predicted Functional Partners:
Ppha_1003
KEGG: cph:Cpha266_1815 hypothetical protein.
       0.655
Ppha_1006
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1818 glycosyl transferase, group 1.
 
     0.598
Ppha_1001
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1.
 
     0.593
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
 
    0.582
Ppha_1004
KEGG: cph:Cpha266_1816 hypothetical protein.
 
     0.574
Ppha_1005
KEGG: cph:Cpha266_1817 serine O-acetyltransferase.
     
 0.513
Ppha_1008
PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0889 polysaccharide biosynthesis protein.
       0.470
Ppha_1010
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1822 glycosyl transferase, group 1.
 
     0.423
Ppha_0256
PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0169 glycosyl transferase.
     0.411
Ppha_0808
PFAM: Radical SAM domain protein; KEGG: cte:CT1749 MoaA/NifB/PqqE family protein.
  
     0.407
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.