STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1009PFAM: glycosyl transferase family 8; KEGG: cph:Cpha266_1821 glycosyl transferase, family 8. (305 aa)    
Predicted Functional Partners:
Ppha_1010
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1822 glycosyl transferase, group 1.
  
  
 0.749
Ppha_1004
KEGG: cph:Cpha266_1816 hypothetical protein.
  
  
 0.630
Ppha_1008
PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0889 polysaccharide biosynthesis protein.
  
  
 0.618
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
     
 0.611
Ppha_1014
KEGG: cph:Cpha266_1826 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
    0.597
Ppha_1013
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2.
  
  
 0.575
Ppha_1019
KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
  
  
 0.565
Ppha_1011
PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein.
       0.561
Ppha_1012
PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase.
       0.560
Ppha_1006
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1818 glycosyl transferase, group 1.
  
  
 0.498
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.