STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1010PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1822 glycosyl transferase, group 1. (391 aa)    
Predicted Functional Partners:
Ppha_1009
PFAM: glycosyl transferase family 8; KEGG: cph:Cpha266_1821 glycosyl transferase, family 8.
  
  
 0.750
Ppha_1004
KEGG: cph:Cpha266_1816 hypothetical protein.
 
  
 0.748
Ppha_1019
KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
 
 
 0.732
Ppha_1001
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1.
 
     0.726
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
 
  
 0.713
Ppha_1011
PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein.
 
  
 0.697
Ppha_1013
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2.
 
    0.665
Ppha_1008
PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0889 polysaccharide biosynthesis protein.
  
  
 0.619
Ppha_1016
KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase.
  
 
 0.579
Ppha_1012
PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase.
  
    0.577
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.