STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1013PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2. (334 aa)    
Predicted Functional Partners:
Ppha_1011
PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein.
 
  
 0.869
Ppha_1019
KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
 
  
 0.836
Ppha_1012
PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase.
 
   
 0.805
Ppha_1014
KEGG: cph:Cpha266_1826 putative anti-sigma regulatory factor, serine/threonine protein kinase.
       0.773
Ppha_1018
PFAM: sugar transferase; KEGG: cph:Cpha266_1830 undecaprenyl-phosphate galactose phosphotransferase.
  
 0.769
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
 
  
 0.731
Ppha_1016
KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase.
 
    0.727
Ppha_1703
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1813 glycosyl transferase, family 2.
 
   
 0.725
Ppha_2292
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.702
Ppha_1004
KEGG: cph:Cpha266_1816 hypothetical protein.
 
  
 0.696
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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