STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1016KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase. (458 aa)    
Predicted Functional Partners:
Ppha_0559
PFAM: NAD-dependent epimerase/dehydratase; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
  
 
 0.851
Ppha_1019
KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
 
  
 0.850
Ppha_1017
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1829 anti-sigma-factor antagonist.
 
     0.812
Ppha_1018
PFAM: sugar transferase; KEGG: cph:Cpha266_1830 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.763
Ppha_1015
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1366 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
       0.760
Ppha_1011
PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein.
 
   
 0.736
Ppha_1012
PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase.
 
     0.728
Ppha_1013
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2.
 
    0.724
Ppha_1020
PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: cph:Cpha266_1832 sigma54 specific transcriptional regulator, Fis family.
       0.672
Ppha_1014
KEGG: cph:Cpha266_1826 putative anti-sigma regulatory factor, serine/threonine protein kinase.
       0.658
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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