STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1022Hypothetical protein. (73 aa)    
Predicted Functional Partners:
Ppha_1023
KEGG: cph:Cpha266_1906 hypothetical protein.
       0.697
Ppha_1024
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cph:Cpha266_1905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.645
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
       0.645
Ppha_1026
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1903 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.612
Ppha_1027
PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase.
       0.492
Ppha_1028
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cph:Cpha266_1901 porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
       0.463
Ppha_1021
KEGG: cph:Cpha266_1833 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein.
       0.406
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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