STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1041PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4. (570 aa)    
Predicted Functional Partners:
Ppha_1290
KEGG: amt:Amet_3130 transposase, IS4 family protein.
  
     0.766
Ppha_2131
Transcriptional modulator of MazE/toxin, MazF; KEGG: mar:MAE_02430 hypothetical protein.
  
     0.609
Ppha_1042
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.605
Ppha_1043
PFAM: plasmid stabilization system; KEGG: cch:Cag_0957 hypothetical protein.
       0.528
Ppha_1135
KEGG: eba:ebA5226 hypothetical protein.
  
     0.461
Ppha_2340
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein.
  
     0.439
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.