STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1051Transposase Tn3; KEGG: rme:Rmet_6188 transposase Tn3. (171 aa)    
Predicted Functional Partners:
Ppha_1052
PFAM: Resolvase domain; KEGG: dsh:Dshi_4084 resolvase domain.
 
   
 0.824
Ppha_1050
KEGG: bmu:Bmul_6243 hypothetical protein.
       0.773
Ppha_1048
PFAM: PilT protein domain protein; KEGG: cch:Cag_1777 PIN (PilT N terminus) domain.
 
     0.526
Ppha_1049
KEGG: cch:Cag_0858 hypothetical protein.
       0.441
Ppha_1053
KEGG: cph:Cpha266_2057 hypothetical protein.
       0.414
Ppha_1054
KEGG: cph:Cpha266_2056 hypothetical protein.
       0.414
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.