STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1135KEGG: eba:ebA5226 hypothetical protein. (447 aa)    
Predicted Functional Partners:
Ppha_1134
KEGG: eba:ebA5228 hypothetical protein.
     
 0.787
Ppha_1849
PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase.
  
     0.541
Ppha_2377
KEGG: cph:Cpha266_1718 hypothetical protein.
  
     0.515
Ppha_0277
PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4.
  
     0.462
Ppha_1041
PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4.
  
     0.461
Ppha_0885
Hypothetical protein; KEGG: amt:Amet_0623 transposase, IS4.
  
     0.460
Ppha_0900
KEGG: cch:Cag_0839 hypothetical protein.
  
     0.442
Ppha_0901
KEGG: cch:Cag_0838 hypothetical protein.
  
     0.442
Ppha_0891
KEGG: cph:Cpha266_1443 hypothetical protein.
  
     0.441
Ppha_0892
KEGG: cch:Cag_0843 hypothetical protein.
  
     0.440
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.