Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1176Carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase. (462 aa)    
Predicted Functional Partners:
Ppha_1732
PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase.
  
 0.963
Ppha_1769
Carotene 7,8-desaturase; PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase.
  
  
 
0.912
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
  
   
 0.774
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
  
   
 0.774
Ppha_2151
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase, putative.
 
   
 0.763
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
     0.756
Ppha_1314
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: cph:Cpha266_1275 NAD-dependent epimerase/dehydratase.
  
     0.728
Ppha_0028
KEGG: cch:Cag_0034 hypothetical protein.
  
     0.692
Ppha_2766
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cch:Cag_1729 hypothetical protein.
  
     0.691
Ppha_0488
PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.681
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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