Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ppha_1184Hypothetical protein; KEGG: sat:SYN_02218 cation transport ATPase. (99 aa)    
Predicted Functional Partners:
Ppha_1183
KEGG: fjo:Fjoh_3045 natural resistance-associated macrophage protein.
   
 0.657
Ppha_1069
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: bth:BT_2774 putative adenylate cyclase.
  
 
 0.520
Ppha_1185
PFAM: Mg2 transporter protein CorA family protein; KEGG: fjo:Fjoh_0242 Mg2+ transporter protein, CorA family protein.
  
  
 0.472
Ppha_0453
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_0755 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
   
 
 0.446
Ppha_1571
KEGG: cch:Cag_0861 hypothetical protein.
  
    0.445
Ppha_1889
PFAM: DoxX family protein; KEGG: pvi:Cvib_1104 DoxX family protein.
   
  0.420
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.415
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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