STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1186PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase. (342 aa)    
Predicted Functional Partners:
Ppha_0211
KEGG: cph:Cpha266_2467 hypothetical protein.
  
     0.682
Ppha_0653
KEGG: plt:Plut_1647 hypothetical protein.
  
     0.634
Ppha_1206
KEGG: cph:Cpha266_1548 hypothetical protein.
  
     0.600
Ppha_1187
KEGG: cph:Cpha266_1020 hypothetical protein.
       0.548
Ppha_1685
5'-Nucleotidase domain protein; PFAM: Alkaline phosphatase; metallophosphoesterase; metalloenzyme domain protein; 5'-Nucleotidase domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein; Belongs to the alkaline phosphatase family.
     
 0.498
Ppha_1584
Aminoacyl-histidine dipeptidase; KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
     0.496
Ppha_0257
KEGG: cch:Cag_1865 hypothetical protein.
  
     0.495
Ppha_1191
PFAM: Protein of unknown function methylase putative; KEGG: cph:Cpha266_1016 conserved hypothetical protein 95.
 
     0.489
Ppha_1194
PFAM: phospholipid/glycerol acyltransferase; KEGG: cph:Cpha266_1013 phospholipid/glycerol acyltransferase.
 
     0.475
Ppha_0946
KEGG: pvi:Cvib_1249 hypothetical protein.
  
     0.452
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.