STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1206KEGG: cph:Cpha266_1548 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Ppha_1207
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cch:Cag_0781 sigma-54 factor.
  
    0.801
hslV
20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.790
Ppha_0653
KEGG: plt:Plut_1647 hypothetical protein.
  
     0.774
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
 
     0.762
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
  
     0.753
Ppha_0329
KEGG: cch:Cag_1809 hypothetical protein.
  
     0.735
Ppha_0438
PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_0469 polysaccharide biosynthesis protein.
  
    0.723
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
  
     0.700
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
  
     0.700
Ppha_0333
KEGG: cch:Cag_0197 hypothetical protein.
  
     0.694
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.