Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1216PFAM: periplasmic binding protein; KEGG: plt:Plut_1148 ABC transporter, periplasmic substrate-binding protein. (312 aa)    
Predicted Functional Partners:
Ppha_1268
PFAM: transport system permease protein; KEGG: cch:Cag_0754 FecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.903
Ppha_1994
PFAM: transport system permease protein; KEGG: cph:Cpha266_0445 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.899
Ppha_1269
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1079 ATPase.
 
 
 0.863
Ppha_1993
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related.
 
 
 0.841
Ppha_1215
PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1149 drug resistance protein, putative.
     
 0.573
Ppha_1991
PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein.
  
     0.498
Ppha_1217
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3523 protein of unknown function DUF450.
       0.496
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
       0.493
Ppha_1219
KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain.
       0.493
Ppha_1214
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cch:Cag_0723 oxidoreductase, Gfo/Idh/MocA family.
       0.469
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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