STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1228PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat. (297 aa)    
Predicted Functional Partners:
Ppha_1875
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 TPR repeat-containing protein.
  
     0.768
Ppha_2065
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 tetratricopeptide TPR_2 repeat protein.
 
     0.756
Ppha_2421
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 tetratricopeptide TPR_2 repeat protein.
  
     0.733
Ppha_1227
PFAM: NUDIX hydrolase; KEGG: cch:Cag_0727 NUDIX/MutT family protein; Belongs to the Nudix hydrolase family.
       0.686
Ppha_0635
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters.
 
 
 0.655
Ppha_0373
PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat.
  
 0.639
Ppha_1253
PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat.
  
 0.575
Ppha_0694
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 tetratricopeptide TPR_2 repeat protein.
 
   
 0.568
Ppha_1232
KEGG: cph:Cpha266_2261 DnaK like protein; Belongs to the heat shock protein 70 family.
  
 0.522
Ppha_1229
PFAM: cyclase/dehydrase; KEGG: cte:CT0933 hypothetical protein.
       0.493
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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