Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1262PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cch:Cag_1014 TonB-dependent receptor-related protein. (651 aa)    
Predicted Functional Partners:
Ppha_2162
KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family.
 
 
 
 0.746
Ppha_0732
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 
 0.651
Ppha_1268
PFAM: transport system permease protein; KEGG: cch:Cag_0754 FecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.649
Ppha_1270
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein.
 
   
 0.642
Ppha_1987
TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 
 0.617
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
     
 0.616
Ppha_1269
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1079 ATPase.
 
   
 0.608
Ppha_0034
KEGG: cch:Cag_1214 hypothetical protein.
  
    0.595
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
    0.584
Ppha_1265
TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cch:Cag_1011 L-threonine-O-3-phosphate decarboxylase.
       0.567
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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