Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1277KEGG: cch:Cag_1077 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Ppha_1276
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 transcriptional regulator, AbrB family.
 
     0.947
Ppha_1275
KEGG: cch:Cag_0867 hypothetical protein.
       0.496
Ppha_0605
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain protein.
  
     0.466
Ppha_1278
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: wsu:WS0422 hypothetical protein.
       0.466
Ppha_2634
KEGG: cch:Cag_1995 hypothetical protein.
  
     0.462
Ppha_0358
KEGG: mar:MAE_48580 hypothetical protein.
  
     0.409
Ppha_0975
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: plt:Plut_1042 transcriptional regulator, XRE family.
  
     0.407
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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